RetrogeneDB ID: | retro_tbel_2743 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117964:76264..76923(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 85.78 % |
Parental protein coverage: | 85.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRF |
ECL.LIIFLRN.LKYALTGDEVKKICMQ.FIKIDG.VR.DITYPAGFMDVISIDKTGENF.LIYDTKG.F | |
Retrocopy | ECL-LIIFLRNILKYALTGDEVKKICMQQFIKIDGRVRPDITYPAGFMDVISIDKTGENFLLIYDTKGHF |
Parental | AVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGN |
AVHR.T.EEAKYKL.KVRKIFVGTKG.PHLVTHDA.TIRYPDPLIKVNDTIQIDLE..KI..FIKFDT.N | |
Retrocopy | AVHRVTHEEAKYKLYKVRKIFVGTKGTPHLVTHDAHTIRYPDPLIKVNDTIQIDLEMSKISGFIKFDTAN |
Parental | LCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGK-GIRLTI |
LCMVTGGAN.GRIGVI.NRERHPG..D.VHVKDANGNSFATRL.NIFVIGKGNK.....PR.K.G.RLT. | |
Retrocopy | LCMVTGGANSGRIGVIINRERHPGPLDAVHVKDANGNSFATRLFNIFVIGKGNK---LFPREK<GVRLTT |
Parental | AEERDKRLAAKQSSG |
AEERDKRLAAKQSSG | |
Retrocopy | AEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |