RetrogeneDB ID: | retro_tbel_310 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1708:119708..120159(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 57.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GKVRTDITY-PAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTH |
GKV.TDI...P.G.MDVISIDK.GENF.LIYDTK..FAVH.ITPEEAKYKLCKVRKIF.GTKGIP.LVTH | |
Retrocopy | GKVHTDISA<PSGLMDVISIDKSGENFHLIYDTKDHFAVHHITPEEAKYKLCKVRKIFKGTKGIPQLVTH |
Parental | DARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG-SFDVVHVK |
DA.TI.YPDPLIKVNDTI.IDLETGKI..FIKFDTGNLC.VT.G.NLG..GV..NRERHP...F..VH.K | |
Retrocopy | DAHTIHYPDPLIKVNDTIWIDLETGKIIHFIKFDTGNLCIVTEGVNLGKLGVVNNRERHPD<PFCLVHIK |
Parental | DANGNSFATRLSN |
DANGNSFA..L.N | |
Retrocopy | DANGNSFAIQLFN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |