RetrogeneDB ID: | retro_tbel_2241 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_106780:4967..5745(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 80.08 % |
Parental protein coverage: | 98.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GP.KHL.RVAAPKHWMLDKLT.VFAP.PSTGPHK.R.CLPLIIFLRNRLKYAL.GDEVKK.C.QRFI | |
Retrocopy | MACGPEKHL*RVAAPKHWMLDKLTSVFAPGPSTGPHKRRGCLPLIIFLRNRLKYALAGDEVKKVCRQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
K..GKVRTDIT.PAGFMDV.SIDKTGENFRLI.DTKG.F.VHR.TPEEAKYKLCKVRKIF.GTKG.PHLV | |
Retrocopy | KVAGKVRTDITDPAGFMDVTSIDKTGENFRLICDTKGHFTVHRVTPEEAKYKLCKVRKIFEGTKGTPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
TH.A.T.RYPDPLIKVNDTIQIDL.TGKIT..IKFDTGNLC.VTGGANLGR.G.IT.RERHPGSFDV..V | |
Retrocopy | THVAHTTRYPDPLIKVNDTIQIDLKTGKITESIKFDTGNLCLVTGGANLGRVGAITSRERHPGSFDVGPV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLPRGKG-IRLTIAEERDKRLAAKQ |
KDA.GNSFAT.L..............S.P.GKG.I.LTIAEERDKRLAAKQ | |
Retrocopy | KDASGNSFATPLQHFCYWQRQQAMDFSSP-GKG>ICLTIAEERDKRLAAKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |