RetrogeneDB ID: | retro_tbel_511 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2302:463890..464488(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 82.5 % |
Parental protein coverage: | 75.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLI-IFLRNRLKYALTGDEVKKICMQRF |
MA.GPKK.LK.V.APKHWMLDK...VFAPRPSTGPHKLR.CLPLI..FLRNRLKYAL.GDEVKKIC.Q.F | |
Retrocopy | MAHGPKKELKQVVAPKHWMLDKWSDVFAPRPSTGPHKLRGCLPLI>VFLRNRLKYALIGDEVKKICVQQF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKID..VRTDITYPAGF.DVISIDKT..NF.L..DTKG.FAVH.I.PEEAK.KLCKVRKIFVGTKGIP.L | |
Retrocopy | IKIDVQVRTDITYPAGFVDVISIDKTRKNFLLSCDTKGHFAVHHIIPEEAKFKLCKVRKIFVGTKGIPYL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRE |
V.HDA.TI.Y.DPLIKVNDTIQI.LETGKITD.IKFDTGNLCMVT.G.NLGR.GVITNRE | |
Retrocopy | VIHDAHTICYLDPLIKVNDTIQINLETGKITDSIKFDTGNLCMVTRGVNLGRTGVITNRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |