Parental gene:

RPS4X, ENSFCAG00000012041

Aliases:RPS4, RPS4X
Description:40S ribosomal protein S4, X isoform [Source:UniProtKB/Swiss-Prot;Acc:P62705]
Organism:Cat (Felis catus)
Coordinates:X:59775712..59781224(-)


>ENSFCAG00000012041
ATGGCTCGTGGTCCCAAGAAACATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAGCTGACCGGTGTGTT
TGCCCCTCGTCCATCTACTGGTCCCCATAAGTTGAGAGAGTGTCTCCCTCTCATCATTTTCCTAAGGAACAGACTTAAGT
ATGCCCTAACAGGAGATGAAGTAAAGAAGATCTGTATGCAGCGTTTTATTAAGATTGATGGCAAGGTCCGAACTGATATA
ACCTACCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGGGAGAATTTCCGCCTGATCTATGACACCAAGGG
TCGCTTTGCTGTTCATCGGATCACACCTGAGGAGGCCAAGTATAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGAACAA
AAGGAATCCCTCATCTGGTGACCCATGATGCTCGCACCATTCGCTATCCTGATCCCCTCATCAAGGTGAATGACACCATT
CAGATTGATTTGGAGACTGGAAAGATTACTGATTTCATCAAGTTTGATACTGGTAATCTGTGTATGGTGACCGGAGGTGC
TAATCTGGGAAGAATTGGTGTGATCACCAACAGAGAGAGACACCCTGGTTCTTTTGATGTGGTTCATGTGAAAGATGCCA
ATGGCAACAGCTTTGCCACCCGGCTTTCCAACATTTTTGTTATTGGCAAGGGCAATAAACCATGGATTTCTCTTCCCCGT
GGAAAGGGCATCCGCCTCACCATTGCTGAAGAGAGAGACAAGAGACTGGCAGCTAAACAGAGCAGTGGGTAA

Library Parental gene expression (RPM)
SRP017611_brain 209 .23 RPM
SRP017611_kidney 796 .64 RPM
SRP017611_liver 316 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2many 1 retrogene
retro_acar_82,
Bos taurus ENSBTAG00000018800 ortholog_one2one 5 retrogenes
retro_btau_119, retro_btau_125, retro_btau_146, retro_btau_33, retro_btau_76,
Canis familiaris ENSCAFG00000017151 possible_ortholog 2 retrogenes
retro_cfam_165, retro_cfam_194,
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
retro_hsap_1704,
Loxodonta africana ENSLAFG00000002654 possible_ortholog 4 retrogenes
retro_lafr_1007, retro_lafr_1081, retro_lafr_1238, retro_lafr_208,
Macropus eugenii ENSMEUG00000007969 possible_ortholog 16 retrogenes
retro_meug_131, retro_meug_141, retro_meug_1644, retro_meug_1732, retro_meug_1814, retro_meug_194, retro_meug_2098, retro_meug_2121, retro_meug_228, retro_meug_562, retro_meug_628, retro_meug_673, retro_meug_843, retro_meug_872, retro_meug_972, retro_meug_999,
Meleagris gallopavo ENSMGAG00000009671 ortholog_many2many 1 retrogene
retro_mgal_3,
Macaca mulatta ENSMMUG00000003295 ortholog_one2one 7 retrogenes
retro_mmul_1243, retro_mmul_1589, retro_mmul_1895, retro_mmul_1999, retro_mmul_2338, retro_mmul_43, retro_mmul_97,
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
retro_mdom_238,
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
retro_ogar_121, retro_ogar_229,
Procavia capensis ENSPCAG00000000761 possible_ortholog 3 retrogenes
retro_pcap_334, retro_pcap_35, retro_pcap_360,
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
retro_ptro_1153,
Pteropus vampyrus ENSPVAG00000012882 possible_ortholog 21 retrogenes
retro_pvam_1021, retro_pvam_1082, retro_pvam_1158, retro_pvam_1264, retro_pvam_1298, retro_pvam_1312, retro_pvam_1327, retro_pvam_1364, retro_pvam_1419, retro_pvam_177, retro_pvam_191, retro_pvam_214, retro_pvam_219, retro_pvam_335, retro_pvam_473, retro_pvam_628, retro_pvam_714, retro_pvam_809, retro_pvam_835, retro_pvam_921, retro_pvam_930,
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
retro_rnor_135,
Ictidomys tridecemlineatus ENSSTOG00000028692 possible_ortholog 8 retrogenes
retro_itri_1179, retro_itri_1607, retro_itri_291, retro_itri_306, retro_itri_368, retro_itri_495, retro_itri_738, retro_itri_985,
Tupaia belangeri ENSTBEG00000002918 ortholog_one2one 20 retrogenes
retro_tbel_1108, retro_tbel_1367, retro_tbel_1465, retro_tbel_1798, retro_tbel_2241, retro_tbel_2659, retro_tbel_2711, retro_tbel_2715, retro_tbel_2722, retro_tbel_2743, retro_tbel_2944, retro_tbel_310, retro_tbel_3172, retro_tbel_3232, retro_tbel_4263, retro_tbel_4569, retro_tbel_4572, retro_tbel_4648, retro_tbel_511, retro_tbel_877,
Vicugna pacos ENSVPAG00000010952 ortholog_one2one 4 retrogenes
retro_vpac_244, retro_vpac_460, retro_vpac_604, retro_vpac_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_229 73.96 72.62
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2. retro_fcat_290 78.31 94.30
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3. retro_fcat_454 73.86 89.73
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4. retro_fcat_563 80.20 76.05
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5. retro_fcat_766 76.62 58.17
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6. retro_fcat_1155 64.08 53.61
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7. retro_fcat_1498 70.27 55.89
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8. retro_fcat_1562 73.19 52.09
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9. retro_fcat_1751 84.12 64.26
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10. retro_fcat_1773 67.31 77.57
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11. retro_fcat_2024 72.19 57.41
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Download FASTA sequences of all ENSFCAG00000012041 retrocopies