RetrogeneDB ID: | retro_tbel_4572 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_91157:2454..3241(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 94.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI | |
Retrocopy | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKVRTDI.YPA.FMDVISIDKTGENFRLIYDT.GRFAVHRITPEEAK.KLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKVRTDIPYPARFMDVISIDKTGENFRLIYDTNGRFAVHRITPEEAKFKLCKVRKIFVGTKGIPHLV |
Parental | THDARTI-RYPDPLIKVNDTIQIDLETGK-ITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVV |
THDA.TI..YPDPLIKVNDTIQIDLETG..I.DFIKFDTGNLC.VTGGANLGRIGVITNRERHPGSFDVV | |
Retrocopy | THDAHTI<SYPDPLIKVNDTIQIDLETGR<IIDFIKFDTGNLCLVTGGANLGRIGVITNRERHPGSFDVV |
Parental | HVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
HV.DAN.NSF.TRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG | |
Retrocopy | HVNDANSNSFVTRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |