RetrogeneDB ID: | retro_tbel_1108 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3877:192537..193059(+) | ||
Located in intron of: | ENSTBEG00000013547 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 67.6 % |
Parental protein coverage: | 66.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | VISIDKTGENFRLIYDTKGRFAVHRI-TPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVN |
V.S.DKTGENF.LIYDTKG.F.VH.I.T......KLC.VRKIFV.TK..P....H.A..I.YP.P.IKVN | |
Retrocopy | VTSTDKTGENFHLIYDTKGHFTVHHI>T*GD*VHKLC*VRKIFVDTKEKPSPSDHGAHIICYPNPFIKVN |
Parental | DTIQIDLETGKITDFIK-FDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVK-DANGNSFATRLSNI |
D.IQIDLE.GK.T.FIK.FD.GNLCMVT..A.LGRIGVITNRERHPG.FDV..VK..ANGNSFAT.L.N. | |
Retrocopy | DPIQIDLEIGKMTYFIK>FDSGNLCMVTRSAHLGRIGVITNRERHPGFFDVAQVK<NANGNSFATQLPNV |
Parental | FVIGKGNKPWISLPRGKGIRLTIAEERD-KRLAAKQSSG |
FVIGKG......L...K.I.LTIAE.R..KRLAAKQSSG | |
Retrocopy | FVIGKGXXXVLFLEE-KMIYLTIAEKRQ<KRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |