RetrogeneDB ID: | retro_itri_1881 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394519.1:282..1018(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000022286 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSSTOG00000014797 | ||
Aliases: | None | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 73.09 % |
Parental protein coverage: | 65.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI |
Y.G..AQSK..ILTLKY..EH.IV.NWDD..KIWHHTFY.EL..A.EEH.VLLTEAPLN.KANREKMTQI | |
Retrocopy | YDGGQAQSKLSILTLKYSMEHSIVINWDDI*KIWHHTFYYELHMAHEEHRVLLTEAPLNLKANREKMTQI |
Parental | MFETFNTPA-MYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK |
M.ETFNT.A..YVAIQ.VLSLYASG.TT.IVM.SG..V.....I.EGYALPH.IL.LDL.G.DL...LMK | |
Retrocopy | MLETFNTLA<IYVAIQFVLSLYASGCTTDIVMNSGNWVAPIMLICEGYALPHTILHLDLPGQDLSGNLMK |
Parental | ILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSL-EKSYELPDGQVITIGNERFRCPEA |
ILTE..YSFTTTAE..I...IKEKLCYV.LDF..E.ATA.SSSSL.EKSYELP...VITIGNE...CPEA | |
Retrocopy | ILTEHSYSFTTTAEQKIMCYIKEKLCYVVLDF-KELATASSSSSL<EKSYELPHRKVITIGNEWSWCPEA |
Parental | LFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVL |
.FQPSFLG.ES.GIH.TTFNSIMKCD..I..DLYANTVL | |
Retrocopy | VFQPSFLGTESSGIHKTTFNSIMKCDINIFNDLYANTVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |