RetrogeneDB ID: | retro_rnor_351 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:61878350..61879481(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000043292 | |
Aliases: | Actbl2, RGD1309504 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSRNOG00000034254 | ||
Aliases: | Actb, Actx | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:P60711] |
Percent Identity: | 92.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
.DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYP | |
Retrocopy | VDDELGALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEHG.VTNWDDMEKIW.HTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVL | |
Retrocopy | IEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASGRTTG.VMDSGDGVTHTVPIYEGYALPH.ILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVR | |
Retrocopy | SLYASGRTTGNVMDSGDGVTHTVPIYEGYALPHGILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
D.KEKLCYVALDFEQEM.TAA.SSSLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFN | |
Retrocopy | DVKEKLCYVALDFEQEMVTAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESRGIHETTFN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIMKCDVDIRKDLYANTVLSGG.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLS | |
Retrocopy | SIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIVTLAPSTMKIKIIAPPERKYSVWIGGSILASLS |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQMWISKQEYDE.GP.IVHRKCF | |
Retrocopy | TFQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 855 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 1102 .49 RPM |
SRP017611_liver | 0 .00 RPM | 363 .62 RPM |