RetrogeneDB ID: | retro_rnor_459 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:90017381..90018499(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000020844 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSRNOG00000034254 | ||
Aliases: | Actb, Actx | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:P60711] |
Percent Identity: | 92.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
M...IAALV.DNGSGMCKAGF.GDD..RAVFPSIV.RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP | |
Retrocopy | MEEEIAALVIDNGSGMCKAGFTGDDTLRAVFPSIVVRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEHGIVTNWDD.EKIWH.T.YNELRVAPEEHPVLLTEAPLNPKANRE.MTQIM.ETFNTPAMYVA.QAVL | |
Retrocopy | IEHGIVTNWDDVEKIWHRT-YNELRVAPEEHPVLLTEAPLNPKANRE-MTQIMYETFNTPAMYVAVQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASG.TTGI..DSGDGVTHTVPIY.GYALPHAILRLDLAG.DLTDYLMKILTE..YSFTTTAEREIVR | |
Retrocopy | SLYASGHTTGIFIDSGDGVTHTVPIYKGYALPHAILRLDLAGWDLTDYLMKILTEPDYSFTTTAEREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
DIKE.LCYVALDFEQEMATAA.SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN | |
Retrocopy | DIKENLCYVALDFEQEMATAALSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
Parental | SIMKCDVDI-RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL |
SIMKCDVDI..KDLYANTVLSGG.TMYPGIADRMQKEITALAPSTMKIKIIAPPERK.SVWIGGSILASL | |
Retrocopy | SIMKCDVDI<SKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKHSVWIGGSILASL |
Parental | STFQQMWISKQEYDESGPSIVHRKCF |
STFQQMWISKQEYDESGPSIVHRKCF | |
Retrocopy | STFQQMWISKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 855 .93 RPM |
SRP017611_kidney | 0 .07 RPM | 1102 .49 RPM |
SRP017611_liver | 0 .00 RPM | 363 .62 RPM |