RetrogeneDB ID: | retro_itri_149 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393290.1:10524715..10525846(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000014738 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSSTOG00000014797 | ||
Aliases: | None | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 92.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
.DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYP | |
Retrocopy | IDDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEHG.VTNWDDMEKIW.HTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVL | |
Retrocopy | IEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTD.LMKILTERGY.FTTTAEREIVR | |
Retrocopy | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYNFTTTAEREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
D.KEKLCYVALDFEQEM..AA.SSSLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFN | |
Retrocopy | DVKEKLCYVALDFEQEMVSAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIMKCDVDIRKDLYANTVLSGG.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLS | |
Retrocopy | SIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIVTLAPSTMKIKIIAPPERKYSVWIGGSILASLS |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQMWISKQEYDE.GP.IVHRKCF | |
Retrocopy | TFQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |