RetrogeneDB ID: | retro_shar_93 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841162.1:520813..521944(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000009237 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSSHAG00000012694 | ||
Aliases: | None | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 93.05 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
DDD..ALVVDNGSGMCKAGF.GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI | |
Retrocopy | DDDLSALVVDNGSGMCKAGFGGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHG.VTNWDDMEKIWHHTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLS | |
Retrocopy | EHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT.YLMKILTERGY.FTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTNYLMKILTERGYNFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNS |
.KEKLCYVALDFEQEM..A..S.SLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFNS | |
Retrocopy | VKEKLCYVALDFEQEMISASISPSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNS |
Parental | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
I.KCDVD.RKDLYANTVLSGG.TMYPGIADRMQKEI.ALAPSTMKIK.IAPPERKYSVWIGGSILASLST | |
Retrocopy | ILKCDVDLRKDLYANTVLSGGSTMYPGIADRMQKEILALAPSTMKIKVIAPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQMWISKQEYDE.GPSIVHRKCF | |
Retrocopy | FQQMWISKQEYDEAGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |