RetrogeneDB ID: | retro_rnor_935 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:84098324..84099448(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000026917 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSRNOG00000034254 | ||
Aliases: | Actb, Actx | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:P60711] |
Percent Identity: | 96.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG-RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY |
M...IAALV.DN.SGMCKAGFAGDDAPRAVFPSIVG..PRHQGVMVGMGQKDSYVGDEAQSKRGILT.KY | |
Retrocopy | MEEEIAALVIDNDSGMCKAGFAGDDAPRAVFPSIVG<HPRHQGVMVGMGQKDSYVGDEAQSKRGILTPKY |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
PIEHGIVTNWDDME.IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV | |
Retrocopy | PIEHGIVTNWDDMETIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
Parental | LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV |
LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL.GRDLTDYLMKILTERGYSFTTTAEREIV | |
Retrocopy | LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLVGRDLTDYLMKILTERGYSFTTTAEREIV |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF |
RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF | |
Retrocopy | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF |
Parental | NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL |
NSIMKCDV.I.KDLY.NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL | |
Retrocopy | NSIMKCDVEICKDLYGNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL |
Parental | STFQQMWISKQEYDESGPSIVHRKCF |
STFQQMWISKQEYDESGPSI.HRKCF | |
Retrocopy | STFQQMWISKQEYDESGPSIIHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 855 .93 RPM |
SRP017611_kidney | 0 .28 RPM | 1102 .49 RPM |
SRP017611_liver | 0 .00 RPM | 363 .62 RPM |