RetrogeneDB ID: | retro_mmus_1677 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:92372139..92372860(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSMUSG00000029580 | ||
Aliases: | Actb, Actx, E430023M04Rik, beta-actin | ||
Description: | actin, beta [Source:MGI Symbol;Acc:MGI:87904] |
Percent Identity: | 79.84 % |
Parental protein coverage: | 64.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LRVAPEEHPVLLTEAPL-NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT |
L.VAPEEH.V.LTEA...NPKANREKM.QIMFETFNT..MY..IQA.LSLYASG.TTGIVMDSGD..THT | |
Retrocopy | LPVAPEEHLVILTEASR<NPKANREKMVQIMFETFNTLTMYMSIQAALSLYASGHTTGIVMDSGDSSTHT |
Parental | VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS |
V.I.EGYALP.AIL.LD.AG..LT.Y.MK.LT..GYSFTTTAEREIV.DIKEKLCY.ALDFEQEM.TA.S | |
Retrocopy | VTICEGYALPLAILNLDMAGWNLTGYPMKTLTVLGYSFTTTAEREIVPDIKEKLCYIALDFEQEMDTAVS |
Parental | SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM-ESCGIHETTFNSIMKCDVDIRKDLYANTVLSG |
SSSLEKS.EL.DGQVITIGNER..C.E.LFQPSFLG..ESCGIH.TTFNSIMKCDVDI.KD.Y.NTVLSG | |
Retrocopy | SSSLEKSFELLDGQVITIGNERCQCLETLFQPSFLGL<ESCGIHQTTFNSIMKCDVDIHKDMYGNTVLSG |
Parental | GTTMYPGIADRMQKEITALAPSTMKIKIIAPPE |
GTTMYP.IADRM.KEIT.L.PSTMKIK.IA.PE | |
Retrocopy | GTTMYPCIADRMPKEITVLVPSTMKIKVIASPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 922 .02 RPM |
SRP007412_cerebellum | 0 .00 RPM | 706 .77 RPM |
SRP007412_heart | 0 .00 RPM | 464 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 679 .61 RPM |
SRP007412_liver | 0 .00 RPM | 437 .32 RPM |
SRP007412_testis | 0 .00 RPM | 567 .67 RPM |