RetrogeneDB ID: | retro_sscr_548 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 16:38870265..38871170(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000016923 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BETA-ACTIN | ||
Ensembl ID: | ENSSSCG00000007585 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q6QAQ1] |
Percent Identity: | 89.9 % |
Parental protein coverage: | 80.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYPI | |
Retrocopy | DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSVVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHG.VTNWDDMEKIWHHTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLS | |
Retrocopy | EHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET-TFN |
.KEKLCYVALDFEQEM..AA.S.SLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHET.T.. | |
Retrocopy | VKEKLCYVALDFEQEMVGAAASPSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHET<TLH |
Parental | SIM-KCDVDIRKDLYA-NTVLS-GGTT |
SI...CDVDIRKDLYA..TVLS.GG.T | |
Retrocopy | SIT<ECDVDIRKDLYA<HTVLS<GGST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 7341 .89 RPM |
SRP014902_testis | 0 .00 RPM | 1929 .75 RPM |
SRP018288_heart | 0 .00 RPM | 240 .56 RPM |
SRP018288_kidney | 0 .00 RPM | 915 .41 RPM |
SRP018288_liver | 0 .00 RPM | 436 .07 RPM |
SRP018288_lung | 0 .00 RPM | 3253 .85 RPM |
SRP018856_adipose | 0 .38 RPM | 2025 .66 RPM |
SRP035408_brain | 0 .00 RPM | 1736 .76 RPM |
SRP035408_liver | 0 .00 RPM | 619 .73 RPM |