RetrogeneDB ID: | retro_shar_370 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841524.1:49757..50525(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSSHAG00000012694 | ||
Aliases: | None | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 81.47 % |
Parental protein coverage: | 69.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
MDDDI.ALVVDN.SGMC.AGF.GD.APRAVFPSIVG.PRHQGVMV.MGQKDSYVGDEAQSKRGILTLKYP | |
Retrocopy | MDDDIDALVVDNSSGMCEAGFSGDSAPRAVFPSIVGCPRHQGVMVVMGQKDSYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IE.GIVTNWDDMEKI.HHTFYNEL.VAPE....LL.EAPLNPKANREKMTQIMFETFN.P..YVAIQAVL | |
Retrocopy | IEYGIVTNWDDMEKI*HHTFYNELPVAPE*YTLLLLEAPLNPKANREKMTQIMFETFNIPTIYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASG.TTGIVMDS.D.V.HTVPIYEGY.LPH.IL.L.LAG.DLT.Y.MKILT.RGY.FT.TAEREIV. | |
Retrocopy | SLYASGCTTGIVMDSRDDVIHTVPIYEGYGLPHVILCLNLAGCDLTEYFMKILTKRGYNFTITAEREIVC |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPE |
DIKEKLCY..L.FEQE.ATAAS...LEKS.ELPDGQVITIG.....C.. | |
Retrocopy | DIKEKLCYIVLEFEQEIATAAS---LEKSCELPDGQVITIGTGGLLCSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |