RetrogeneDB ID: | retro_mmus_283 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:111255132..111256263(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000055194 | |
Aliases: | Actbl2, 4732495G21Rik | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSMUSG00000029580 | ||
Aliases: | Actb, Actx, E430023M04Rik, beta-actin | ||
Description: | actin, beta [Source:MGI Symbol;Acc:MGI:87904] |
Percent Identity: | 92.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
.DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYP | |
Retrocopy | VDDELTALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEHG.VTNWDDMEKIW.HTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVL | |
Retrocopy | IEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVR | |
Retrocopy | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
D.KEKLCYVALDFEQEM.TAA.SSSLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFN | |
Retrocopy | DVKEKLCYVALDFEQEMVTAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESRGIHETTFN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIMKCDVDIRKDL.ANTVLSGG.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLS | |
Retrocopy | SIMKCDVDIRKDLFANTVLSGGSTMYPGIADRMQKEIVTLAPSTMKIKIIAPPERKYSVWIGGSILASLS |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQMWISKQEYDE.GP.IVHRKCF | |
Retrocopy | TFQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 922 .02 RPM |
SRP007412_cerebellum | 0 .65 RPM | 706 .77 RPM |
SRP007412_heart | 0 .00 RPM | 464 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 679 .61 RPM |
SRP007412_liver | 0 .00 RPM | 437 .32 RPM |
SRP007412_testis | 0 .37 RPM | 567 .67 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_26590 | 1056 libraries | 10 libraries | 2 libraries | 2 libraries | 2 libraries |