RetrogeneDB ID: | retro_itri_4 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393586.1:849750..850884(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000027012 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSSTOG00000014797 | ||
Aliases: | None | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 89.52 % |
Parental protein coverage: | 99.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEH |
DIAALV.DNGSG.CKAGFAG.DAPR.VFPSIVGRPRH.G...G.GQKDSYVGDEAQSKRGILTLKYPIEH | |
Retrocopy | DIAALVLDNGSGVCKAGFAGEDAPRVVFPSIVGRPRHHGMLMGIGQKDSYVGDEAQSKRGILTLKYPIEH |
Parental | GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY |
G.VTNWDDMEKIWHHTFY.ELRVAPEEHPVLLTEAPLNPK.NREKM.QIMFE.F.TPA.YVA.QAVLSLY | |
Retrocopy | GVVTNWDDMEKIWHHTFYHELRVAPEEHPVLLTEAPLNPKSNREKMAQIMFESFGTPALYVALQAVLSLY |
Parental | ASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK |
ASGRTT.IVMDSGDGVTHTVPIYEGYAL.HAILRLDLAG..LT.YLMKILTERGYSFTTTAEREIVRDIK | |
Retrocopy | ASGRTTSIVMDSGDGVTHTVPIYEGYALTHAILRLDLAGWNLTGYLMKILTERGYSFTTTAEREIVRDIK |
Parental | EKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIM |
EKLCYVALDF.QEM.TAA.SSSLEKSYELPDGQVITIG.ERFRCPEALFQP.FLG.ESCGIHETTFNSI. | |
Retrocopy | EKLCYVALDFKQEMSTAATSSSLEKSYELPDGQVITIGSERFRCPEALFQPCFLGLESCGIHETTFNSIL |
Parental | KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ |
KCDVD.RKDLYANTVLSGGTTMYPG.ADRM.KEI.ALAPST.KIKI.APPERKYSVWIGGSILASLSTFQ | |
Retrocopy | KCDVDLRKDLYANTVLSGGTTMYPGLADRMHKEISALAPSTVKIKIVAPPERKYSVWIGGSILASLSTFQ |
Parental | QMWISKQEYDESGPSIVHRKCF |
Q.WISKQEY.E.GPSIVH.KCF | |
Retrocopy | QIWISKQEYAEAGPSIVHHKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |