RetrogeneDB - Parental gene ENSMMUG00000011153 details

Parental gene:	MMU.17389, ENSMMUG00000011153
Aliases:	None
Description:	actin, cytoplasmic 1 [Source:RefSeq peptide;Acc:NP_001028256]
Organism:	*Rhesus macaque (Macaca mulatta)*
Coordinates:	3:43374785..43460162(+)

							
>ENSMMUG00000011153
ATGGATGATGATATCGCCGCGCTCGTTGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCCCC

CCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGATTCATATG

TGGGCGACGAGGCCCAGAGCAAGAGAGGCATTCTCACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGAC

GACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCTGAGGAGCACCCCGTGCTGCTGACCGA

GGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTACG

TGGCCATCCAGGCTGTGCTGTCCCTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACC

CACACTGTGCCCATCTATGAGGGGTATGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGA

CTACCTCATGAAGATCCTCACTGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACATTAAGG

AGAAGCTGTGCTATGTCGCCCTAGACTTCGAGCAGGAGATGGCCACGGCGGCTTCCAGCTCCTCCCTGGAGAAGAGCTAC

GAGCTGCCCGATGGCCAGGTCATCACCATTGGCAACGAGCGGTTCCGCTGCCCTGAGGCTCTCTTCCAACCTTCCTTCCT

GGGCATGGAGTCCTGTGGCATCCACGAAACTACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGTAAAGACCTGT

ACGCCAACACAGTGCTGTCTGGTGGCACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATTACTGCCCTG

GCGCCCAGCACGATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCTGTGTGGATCGGCGGCTCCATCCTGGC

CTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCTGGCCCTTCCATCGTCCACCGCAAAT

GCTTCTAG

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	904 .76 RPM
SRP007412_brain	78 .44 RPM
SRP007412_cerebellum	56 .70 RPM
SRP007412_heart	68 .54 RPM
SRP007412_kidney	87 .79 RPM
SRP007412_liver	290 .35 RPM
SRP007412_testis	34 .45 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000006601	possible_ortholog	1 retrogene	retro_amel_11,
Anas platyrhynchos	ENSAPLG00000010147	ortholog_one2many	1 retrogene	retro_apla_2,
Canis familiaris	ENSCAFG00000016020	ortholog_one2many	3 retrogenes	retro_cfam_120, retro_cfam_260, retro_cfam_934,
Callithrix jacchus	ENSCJAG00000000008	ortholog_one2many	2 retrogenes	retro_cjac_243, retro_cjac_56,
Cavia porcellus	ENSCPOG00000013467	possible_ortholog	1 retrogene	retro_cpor_60,
Dipodomys ordii	ENSDORG00000010079	ortholog_one2many	1 retrogene	retro_dord_11,
Equus caballus	ENSECAG00000015935	ortholog_one2many	2 retrogenes	retro_ecab_271, retro_ecab_994,
Felis catus	ENSFCAG00000006788	ortholog_one2many	1 retrogene	retro_fcat_1613,
Homo sapiens	ENSG00000075624	possible_ortholog	6 retrogenes	retro_hsap_1563, retro_hsap_1894, retro_hsap_3386, retro_hsap_38, retro_hsap_4204, retro_hsap_518,
Gallus gallus	ENSGALG00000009621	possible_ortholog	1 retrogene	retro_ggal_4,
Gorilla gorilla	ENSGGOG00000001133	possible_ortholog	18 retrogenes	retro_ggor_1177, retro_ggor_1188, retro_ggor_1211, retro_ggor_1266, retro_ggor_1297, retro_ggor_1332, retro_ggor_1387, retro_ggor_1622, retro_ggor_1825, retro_ggor_1890, retro_ggor_2292, retro_ggor_2774, retro_ggor_2817, retro_ggor_3002, retro_ggor_352, retro_ggor_405, retro_ggor_44, retro_ggor_477,
Loxodonta africana	ENSLAFG00000009167	possible_ortholog	1 retrogene	retro_lafr_116,
Meleagris gallopavo	ENSMGAG00000003960	possible_ortholog	2 retrogenes	retro_mgal_5, retro_mgal_6,
Mustela putorius furo	ENSMPUG00000016612	possible_ortholog	2 retrogenes	retro_mputfur_440, retro_mputfur_461,
Mus musculus	ENSMUSG00000029580	possible_ortholog	7 retrogenes	retro_mmus_1613, retro_mmus_1677, retro_mmus_283, retro_mmus_2880, retro_mmus_3411, retro_mmus_3532, retro_mmus_761,
Ornithorhynchus anatinus	ENSOANG00000007716	possible_ortholog	2 retrogenes	retro_oana_4, retro_oana_8,
Otolemur garnettii	ENSOGAG00000008348	possible_ortholog	1 retrogene	retro_ogar_2637,
Petromyzon marinus	ENSPMAG00000004161	possible_ortholog	1 retrogene	retro_pmar_4,
Pongo abelii	ENSPPYG00000017336	possible_ortholog	23 retrogenes	retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,
Pan troglodytes	ENSPTRG00000018890	ortholog_one2many	27 retrogenes	retro_ptro_1042, retro_ptro_1051, retro_ptro_1076, retro_ptro_1143, retro_ptro_1272, retro_ptro_1515, retro_ptro_1756, retro_ptro_178, retro_ptro_2122, retro_ptro_2173, retro_ptro_2349, retro_ptro_2454, retro_ptro_263, retro_ptro_2805, retro_ptro_2854, retro_ptro_314, retro_ptro_3207, retro_ptro_3219, retro_ptro_3282, retro_ptro_3287, retro_ptro_3292, retro_ptro_3302, retro_ptro_3307, retro_ptro_387, retro_ptro_432, retro_ptro_53, retro_ptro_584,
Rattus norvegicus	ENSRNOG00000034254	possible_ortholog	10 retrogenes	retro_rnor_1324, retro_rnor_1386, retro_rnor_1799, retro_rnor_2371, retro_rnor_2714, retro_rnor_2856, retro_rnor_2978, retro_rnor_351, retro_rnor_459, retro_rnor_935,
Sarcophilus harrisii	ENSSHAG00000012694	possible_ortholog	4 retrogenes	retro_shar_120, retro_shar_370, retro_shar_62, retro_shar_93,
Sus scrofa	ENSSSCG00000007585	possible_ortholog	1 retrogene	retro_sscr_548,
Ictidomys tridecemlineatus	ENSSTOG00000006868	possible_ortholog	2 retrogenes	retro_itri_1675, retro_itri_531,
Ictidomys tridecemlineatus	ENSSTOG00000014797	possible_ortholog	3 retrogenes	retro_itri_149, retro_itri_1881, retro_itri_4,
Xenopus tropicalis	ENSXETG00000025116	possible_ortholog	1 retrogene	retro_xtro_6,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmul_135	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMMUG00000011153 retrocopies

Parental gene:

MMU.17389, ENSMMUG00000011153