RetrogeneDB ID: | retro_cpor_60 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_29:4451575..4452706(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000011023 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSCPOG00000013467 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q71FK5] |
Percent Identity: | 93.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
.DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYP | |
Retrocopy | IDDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEHG.VTNWDDMEKIW.HTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVL | |
Retrocopy | IEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVR | |
Retrocopy | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
D.KEKLCYVALDFEQEM..AA.SSSLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFN | |
Retrocopy | DVKEKLCYVALDFEQEMTGAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIMKCDVDIRKDLYANTVLSGG.TMYPGIADRMQKEI.ALAPSTMKIKIIAPPERKYSVWIGGSILASLS | |
Retrocopy | SIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIVALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQMWISKQEYDESGP.IVHRKCF | |
Retrocopy | TFQQMWISKQEYDESGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1554 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 1305 .98 RPM |
SRP017611_liver | 0 .00 RPM | 866 .75 RPM |
SRP040447_lung | 0 .00 RPM | 5456 .76 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 727 .51 RPM |