RetrogeneDB ID: | retro_dnov_1429 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_202550:1..714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSDNOG00000018915 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 95.82 % |
Parental protein coverage: | 72.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNP-DILTYVAWKLS |
.YSVTANSKLVIITAGARQQEGESRLNLVQ.NVNIFKFIIPNVVKYSPNCKLLIVSNP.DILTYVAWKLS | |
Retrocopy | DYSVTANSKLVIITAGARQQEGESRLNLVQHNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKLS |
Parental | GFPKNRVIGSGCNLDSARFRYLMGERLGVHPSSCHGWVLGEHGDSSVPVWSGMNVAGVSLKNLHPELGTD |
GFPKNRVIGSGCNLDSARF.YLMGERLGVHPSSCHGWVLGEHGDSSVPVWSGMNVAGVSLKNLHPELGTD | |
Retrocopy | GFPKNRVIGSGCNLDSARFHYLMGERLGVHPSSCHGWVLGEHGDSSVPVWSGMNVAGVSLKNLHPELGTD |
Parental | ADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLRRVHPVSIMIKGLYGIKDENILSV |
ADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLRRVHPVS.MIKGLYGIKD...LSV | |
Retrocopy | ADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLRRVHPVSTMIKGLYGIKDDVFLSV |
Parental | PCVLGQNGISDVVKVTLTPEEEGR-LKKS |
.CVLGQNGISDVVKVTLTPEEEGR.LKKS | |
Retrocopy | LCVLGQNGISDVVKVTLTPEEEGR<LKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 1 .94 RPM | 78 .95 RPM |
SRP012922_cerebellum | 0 .69 RPM | 17 .73 RPM |
SRP012922_heart | 0 .46 RPM | 17 .87 RPM |
SRP012922_kidney | 0 .82 RPM | 29 .84 RPM |
SRP012922_liver | 1 .55 RPM | 66 .10 RPM |
SRP012922_lung | 0 .46 RPM | 22 .30 RPM |
SRP012922_quadricep_muscle | 7 .10 RPM | 270 .18 RPM |
SRP012922_spleen | 0 .69 RPM | 26 .55 RPM |