RetrogeneDB ID: | retro_dnov_362 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_3995:25074..25813(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSDNOG00000018915 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 90.8 % |
Parental protein coverage: | 76. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNP-DILTYVAWKLS |
.YSVTANSKLVIITAGARQQEGESRLNLVQRN.NIFKFIIPNVVKYSPNCKLLIVSNP..ILTYVAWKLS | |
Retrocopy | DYSVTANSKLVIITAGARQQEGESRLNLVQRNANIFKFIIPNVVKYSPNCKLLIVSNPVNILTYVAWKLS |
Parental | GFPKNRVIGSGCNLDSARFRYLMGERLGVHPSSCHGWVLGEHGDSSVPVWSGMNVAGVSLKNLHPELGTD |
.FPKNRVIGSGCNLDSARFRYLMGERLGVHPSSCHGWVLGEHGDSSVPVWSG.NVAGVSLKNLHPELGTD | |
Retrocopy | CFPKNRVIGSGCNLDSARFRYLMGERLGVHPSSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPELGTD |
Parental | ADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLRRVHPVSIMIKGLYGIKDENILSV |
ADKEQWKEVHKQVVDSAYEVIKLKGY..W..GLSVADLAETIMKNLR.VHPVS.MIKG.Y.IKD...LSV | |
Retrocopy | ADKEQWKEVHKQVVDSAYEVIKLKGYI-WTFGLSVADLAETIMKNLRCVHPVSTMIKGIYEIKDDVFLSV |
Parental | PCV-LG-QNGISDVVKVTLTPEEEGRLKKSADTLWGIQKE |
PCV.LG..NGISDVVKVTLTPEEEGRLKKSA.TLWGIQ.. | |
Retrocopy | PCV<LG<DNGISDVVKVTLTPEEEGRLKKSAGTLWGIQRD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 78 .95 RPM |
SRP012922_cerebellum | 0 .00 RPM | 17 .73 RPM |
SRP012922_heart | 0 .00 RPM | 17 .87 RPM |
SRP012922_kidney | 0 .00 RPM | 29 .84 RPM |
SRP012922_liver | 0 .00 RPM | 66 .10 RPM |
SRP012922_lung | 0 .00 RPM | 22 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 270 .18 RPM |
SRP012922_spleen | 0 .00 RPM | 26 .55 RPM |