RetrogeneDB ID: | retro_btau_190 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:96541497..96542079(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000005098 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSBTAG00000005150 | ||
Aliases: | None | ||
Description: | High mobility group protein B3 [Source:UniProtKB/Swiss-Prot;Acc:Q32L31] |
Percent Identity: | 80.63 % |
Parental protein coverage: | 95.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDP.KPKGKMSA.AFFVQ.CR..HKK..P.VPVNFAEFSKKCSERWKTMSGKEKS.FDEMAKADKV. | |
Retrocopy | MAKGDPEKPKGKMSAHAFFVQMCRKKHKK-TPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAKADKVH |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQ |
Y..EMKDYG.AKGGKK..DPNAPKRPPSGFFLF.SEF...IKS.NPGISIGDVAKKLGEMWNNLSDS.KQ | |
Retrocopy | YNQEMKDYGSAKGGKK--DPNAPKRPPSGFFLFFSEFCSEIKSTNPGISIGDVAKKLGEMWNNLSDSKKQ |
Parental | PYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEE |
.Y.NK.AKLK.KYEKDVADY..KG.FDG.KG.AKV..KKVEEE....EE.E | |
Retrocopy | LYVNKDAKLK-KYEKDVADY--KGEFDGTKGPAKVVQKKVEEEEDKEEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1 .37 RPM |
ERP005899_muscle | 0 .00 RPM | 6 .49 RPM |
SRP017611_brain | 0 .00 RPM | 5 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .49 RPM |
SRP017611_liver | 0 .00 RPM | 0 .53 RPM |
SRP030211_testis | 0 .00 RPM | 32 .43 RPM |