Parental gene:

ENSOCUG00000005986

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018731:1608069..1610925(-)


>ENSOCUG00000005986
ATGGCTAAAGGTGACCCCAAGAAGCCCAAGGGCAAGATGTCTGCTTACGCCTTCTTTGTGCAGACTTGCAGAGAGGAACA
CAAGAAGAAAAACCCAGAGGTCCCGGTCAACTTCGCAGAGTTTTCCAAGAAGTGCTCCGAGAGGTGGAAGACAATGTCTG
GAAAGGAAAAGTCTAAATTTGATGAAATGGCGAAGGCGGATAAAGTACGTTATGATCGGGAAATGAAGGATTATGGACCA
GCTAAGGGCGGCAAGAAGAAAAAGGACCCCAATGCCCCTAAGAGACCACCGTCTGGATTCTTCCTCTTCTGTTCAGAATT
CCGCCCCAAGATCAAATCCACAAACCCTGGAATCTCTATTGGCGATGTGGCCAAAAAGCTGGGGGAGATGTGGAATAACC
TGAGTGACAGTGAAAAGCAGCCGTACATCACCAAGGCGGCAAAGCTCAAGGAGAAGTACGAAAAGGATGTTGCCGACTAT
AAATCTAAAGGAAAGTTCGATGGTGCAAAGGGTCCTGCGAAAGTTGCCCGGAAAAAGGTGGAAGAGGAAGACGAAGAGGA
CGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGATGAATAA

Library Parental gene expression (RPM)
SRP017611_liver 3 .24 RPM
SRP017611_kidney 9 .32 RPM
SRP017611_brain 1 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 ortholog_many2many 2 retrogenes
Canis familiaris ENSCAFG00000028715 possible_ortholog 1 retrogene
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2many 2 retrogenes
Callithrix jacchus ENSCJAG00000003936 possible_ortholog 9 retrogenes
Cavia porcellus ENSCPOG00000000601 possible_ortholog 2 retrogenes
Dipodomys ordii ENSDORG00000010826 possible_ortholog 4 retrogenes
Equus caballus ENSECAG00000020596 possible_ortholog 1 retrogene
Echinops telfairi ENSETEG00000015689 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000024624 possible_ortholog 4 retrogenes
Homo sapiens ENSG00000029993 possible_ortholog 8 retrogenes
Gorilla gorilla ENSGGOG00000027164 possible_ortholog 16 retrogenes
Loxodonta africana ENSLAFG00000025877 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000015668 possible_ortholog 4 retrogenes
Myotis lucifugus ENSMLUG00000010926 possible_ortholog 4 retrogenes
Macaca mulatta ENSMMUG00000004633 possible_ortholog 20 retrogenes
Monodelphis domestica ENSMODG00000005735 ortholog_one2many 7 retrogenes
Mustela putorius furo ENSMPUG00000011606 ortholog_many2many 2 retrogenes
Mus musculus ENSMUSG00000015217 possible_ortholog 1 retrogene
Oryctolagus cuniculus ENSOCUG00000000074 within_species_paralog 1 retrogene
Oryctolagus cuniculus ENSOCUG00000021335 other_paralog 16 retrogenes
Otolemur garnettii ENSOGAG00000001773 possible_ortholog 19 retrogenes
Procavia capensis ENSPCAG00000001945 possible_ortholog 1 retrogene
Pongo abelii ENSPPYG00000020818 possible_ortholog 22 retrogenes
Pan troglodytes ENSPTRG00000022371 possible_ortholog 22 retrogenes
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2many 1 retrogene
Rattus norvegicus ENSRNOG00000011096 possible_ortholog 4 retrogenes
Rattus norvegicus ENSRNOG00000050910 possible_ortholog 5 retrogenes
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000012745 ortholog_many2many 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000023908 possible_ortholog 6 retrogenes
Tupaia belangeri ENSTBEG00000003068 ortholog_one2many 18 retrogenes
Tursiops truncatus ENSTTRG00000000205 ortholog_one2many 2 retrogenes
Vicugna pacos ENSVPAG00000000096 ortholog_one2many 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_534 58.24 87.50
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2. retro_ocun_568 75.79 93.50
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3. retro_ocun_891 54.31 57.50
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4. retro_ocun_931 69.04 95.50
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5. retro_ocun_1033 62.41 65.00
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6. retro_ocun_1913 63.89 71.50
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7. retro_ocun_1914 63.57 69.50
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Download FASTA sequences of all ENSOCUG00000005986 retrocopies