RetrogeneDB ID: | retro_mdom_1883 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 8:220901583..220901886(+) | ||
Located in intron of: | ENSMODG00000004929 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMODG00000005735 | ||
Aliases: | HMGB3, HmgB3x | ||
Description: | high mobility group protein B3 [Source:RefSeq peptide;Acc:NP_001157151] |
Percent Identity: | 79.05 % |
Parental protein coverage: | 54.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KDYGPAKGGKKKKDP-NAPKRPPSGFFLFCSEFRPKIKSTNPGISIG-DVAKKLGEMWNNLSDNEKQPYN |
KDY.PAKGGKK.K.P.N.PK..P.GFFLFCSEF..KIKSTNPGISIG.DVAKKLGEMWNNL.DNE.QPYN | |
Retrocopy | KDYEPAKGGKK-KYP>NVPKKSPFGFFLFCSEFLSKIKSTNPGISIG<DVAKKLGEMWNNLNDNE*QPYN |
Parental | NKAAKLKEKYEKDVADYKSKGKFDGAKGAAKAARK |
NKAAKLKEK.EK.V.DYK.K..F.GAKG.AKAA.K | |
Retrocopy | NKAAKLKEK*EKAV-DYKLKRQFNGAKGTAKAAWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |