RetrogeneDB ID: | retro_tbel_408 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1970:131658..132102(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 94.59 % |
Parental protein coverage: | 73.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGREKSKFDEM-KADKVR |
MAKGDPKKPKGKMSAY.FFVQTCRE.HKKKNPEVPVNFAEFSKKCSERWKTMSG.EKSKFDEM.KADKVR | |
Retrocopy | MAKGDPKKPKGKMSAYTFFVQTCREKHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
Parental | YDREMKDYGPAKGAKKKKDPN-PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
YDREMKDYGPAKG.KKKKDPN.PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ | |
Retrocopy | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
Parental | PYITKAAK |
PYIT..AK | |
Retrocopy | PYITNGAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |