RetrogeneDB ID: | retro_tbel_3623 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_147022:49888..50272(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 70.99 % |
Parental protein coverage: | 64.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGREKSKFDEM-KADKVRYDREMK-D |
PKGKMSA...FVQTCRE.HKKKNPEVPV.FAEFSK.CSERWKT.SG.EKSKFD.M.KADKV.YD.EM..D | |
Retrocopy | PKGKMSAHVSFVQTCREDHKKKNPEVPVDFAEFSKMCSERWKTVSGKEKSKFDAMAKADKVCYDQEMR<D |
Parental | YGPAKGAKKKKDPN-PKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS |
YG.AKG.KKKKDPN.PK...S.FFL.C.E..P......P..IS..DV.KKLGE.WNNLSD. | |
Retrocopy | YGLAKGGKKKKDPNAPKKLMSEFFLSCLEL-PQDQIHQP>SISTEDVVKKLGEIWNNLSDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |