RetrogeneDB ID: | retro_mdom_587 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:420863773..420864294(-) | ||
Located in intron of: | ENSMODG00000019785 | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000019779 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMODG00000005735 | ||
Aliases: | HMGB3, HmgB3x | ||
Description: | high mobility group protein B3 [Source:RefSeq peptide;Acc:NP_001157151] |
Percent Identity: | 89.39 % |
Parental protein coverage: | 94.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCS-ERWKTMSGKEKSKFDEMAKADKV |
MAK.DPKKPKGKMSAYAFFVQTCREEHKK.NPEVPVN.AEFSKKCS..RWKTMSGKEKSKFDEMAKADKV | |
Retrocopy | MAKSDPKKPKGKMSAYAFFVQTCREEHKK-NPEVPVNVAEFSKKCS<RRWKTMSGKEKSKFDEMAKADKV |
Parental | RYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEK |
RY.R.MKDYGPAKGGKKKKD.NAPK.PPSGFFLFCSEF.PKIKSTNPGISIGDVAKKLGE.WN.LSDNEK | |
Retrocopy | RYERGMKDYGPAKGGKKKKDLNAPKGPPSGFFLFCSEFCPKIKSTNPGISIGDVAKKLGEIWNDLSDNEK |
Parental | QPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAAKAARK |
QP.NNKAAKLKEKYEKDVADYKSK.....AKGAAKAA.K | |
Retrocopy | QPCNNKAAKLKEKYEKDVADYKSKRE---AKGAAKAAWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .12 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .20 RPM | 0 .00 RPM |