RetrogeneDB ID: | retro_ocun_1914 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:7498484..7498891(-) | ||
Located in intron of: | ENSOCUG00000001849 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005986 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.57 % |
Parental protein coverage: | 69.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP |
.RW.T..GKEKSK..EMAKADKV..D.EM.D.GPAKGG.K.....APK.PPSGFFL..SE..P.I.S.NP | |
Retrocopy | KRWETVFGKEKSKSEEMAKADKVCHDQEMND*GPAKGGGKAS--SAPKSPPSGFFLLWSELDPEISSANP |
Parental | GISIGDVAKKLGEMWNNLSDSEKQPYITKAAKLKEKYEKDVAD-YKSKGKFDGAKGPAKVARKKVEEEDE |
G.S.GDVAKKLGE.W....DSEKQ..ITK.AKL..K.E.DVAD...SKGK.DGA.G..KV..K.V.EE.E | |
Retrocopy | GMSTGDVAKKLGETWTH*CDSEKQSPITKLAKL-QKSE*DVAD<LESKGKCDGAQGLTKVVQKMVLEEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .32 RPM |
SRP017611_liver | 0 .00 RPM | 3 .24 RPM |