RetrogeneDB ID: | retro_tbel_3781 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_15302:139462..139811(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 55.93 % |
Parental protein coverage: | 58.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AKGDPKKPKGKMSAYAFFVQTCREEHKKKNP-EVPVNFAEFSKKCSERWKTMSGREKSKFDEMK-ADKVR |
.KGDPKKPK.KMS.YAFFVQ.C.E.HKKK.P....V.F.EFS.KCS.RWKTMS..EK.K...M...DK.. | |
Retrocopy | SKGDPKKPKSKMSSYAFFVQICWEKHKKKHP>DA*VSFSEFS-KCSKRWKTMSAKEKGKPEDMA*VDKAH |
Parental | YDREMKDYGPAKGAKKKKDPNPKRPPSGFFLFCSEFRPKIKSTNPGIS |
Y.R.MK.Y..............KRP.S.FFLFCSE..PKI....PG.S | |
Retrocopy | YERAMKTYTLSGXXXXQNLNASKRPTSVFFLFCSEYQPKINGEHPGPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |