RetrogeneDB ID: | retro_tbel_4203 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_71707:1665..2187(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 90.86 % |
Parental protein coverage: | 87.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGREKSKFDEM-KADKVR |
MAKGDPKKPKGKMSAYAFFVQTCREEHKKKN.EVPVNFAEFSKK.SERWKT.SG.EK.K.DEM.KADKVR | |
Retrocopy | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNGEVPVNFAEFSKKRSERWKTVSGKEKWKLDEMAKADKVR |
Parental | YDREMKDYGPAKGAKKKKDPN-PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
YDREMKDYGPAKG.KKKKDPN.PKR.PS.FFLFCSEFR.KIKSTNPGISIGDVAKKLG.MWNNLSDSEKQ | |
Retrocopy | YDREMKDYGPAKGGKKKKDPNAPKRQPSVFFLFCSEFRLKIKSTNPGISIGDVAKKLGDMWNNLSDSEKQ |
Parental | PYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKV |
PYITKAAKLK.KYEKDVAD.KSKGKFDGA.GPAKV | |
Retrocopy | PYITKAAKLK-KYEKDVADSKSKGKFDGAMGPAKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |