RetrogeneDB ID: | retro_tbel_605 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2536:99946..100427(-) | ||
Located in intron of: | ENSTBEG00000014097 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 70.99 % |
Parental protein coverage: | 79.8 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGREKSKFDEM-KADKVR |
.AKGD.KKPKGK.S.Y.FFVQTC..EHKK.N.EVP.NFA.FSKKCS.R.KT.S.....KFDE..K...V. | |
Retrocopy | IAKGDSKKPKGKTSVYVFFVQTCKAEHKK-NLEVPLNFA*FSKKCSKR*KTTSEKKRLKFDEIAKVYNVH |
Parental | YDREMKDYGPAKG-AKKKKD--PNPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSE |
YD.EMKDYGPAKG.A..K.......KRPPSGFFLFCSEF.PKIKSTNPGIS.GD.AKKLGE.WNN.SDS. | |
Retrocopy | YDWEMKDYGPAKG>ARRKRTLMXXXKRPPSGFFLFCSEFHPKIKSTNPGISTGDMAKKLGEIWNN*SDSK |
Parental | KQPYITKAAKLKEKYEKDVADY |
KQ.YITK...LKEKY.KDVADY | |
Retrocopy | KQRYITKVTMLKEKYDKDVADY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |