Parental gene:

HMGB3, ENSMODG00000005735

Aliases:HMGB3, HmgB3x
Description:high mobility group protein B3 [Source:RefSeq peptide;Acc:NP_001157151]
Organism:Opossum (Monodelphis domestica)
Coordinates:X:40254006..40263016(+)


>ENSMODG00000005735
ATGGCTAAAGGTGACCCCAAGAAACCGAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAAACTTGCCGGGAAGAGCA
TAAGAAGAAGAACCCAGAGGTTCCTGTTAACTTCGCAGAATTTTCTAAAAAGTGCTCCGAGAGGTGGAAGACTATGTCCG
GGAAAGAGAAATCCAAGTTTGATGAGATGGCAAAAGCTGATAAGGTACGATATGATAGAGAAATGAAGGACTACGGACCA
GCAAAAGGTGGCAAGAAGAAGAAGGATCCTAATGCACCCAAAAGGCCCCCGTCTGGCTTCTTCCTCTTCTGTTCAGAGTT
TCGTCCCAAGATCAAGTCTACAAACCCTGGCATATCCATTGGGGATGTGGCAAAGAAGCTTGGTGAAATGTGGAACAATC
TCAGTGACAACGAGAAGCAACCTTATAATAATAAGGCAGCCAAACTGAAGGAGAAATATGAGAAGGATGTCGCAGATTAT
AAGTCGAAAGGGAAGTTCGATGGGGCAAAGGGGGCGGCTAAAGCTGCCCGGAAAAAGAATCCTGAAAAGCAGGTGATGAG
GTTTTAG

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 ortholog_one2many 2 retrogenes
Canis familiaris ENSCAFG00000028715 ortholog_one2one 1 retrogene
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2one 2 retrogenes
Callithrix jacchus ENSCJAG00000003936 ortholog_one2many 9 retrogenes
Cavia porcellus ENSCPOG00000000601 ortholog_one2one 2 retrogenes
Dipodomys ordii ENSDORG00000010826 ortholog_one2one 4 retrogenes
Equus caballus ENSECAG00000020596 ortholog_one2one 1 retrogene
Echinops telfairi ENSETEG00000015689 ortholog_one2many 4 retrogenes
Felis catus ENSFCAG00000024624 ortholog_one2one 4 retrogenes
Homo sapiens ENSG00000029993 ortholog_one2one 8 retrogenes
Gorilla gorilla ENSGGOG00000027164 ortholog_one2many 16 retrogenes
Loxodonta africana ENSLAFG00000025877 ortholog_one2one 1 retrogene
Microcebus murinus ENSMICG00000015668 ortholog_one2many 4 retrogenes
Myotis lucifugus ENSMLUG00000010926 ortholog_one2many 4 retrogenes
Macaca mulatta ENSMMUG00000004633 ortholog_one2many 20 retrogenes
Monodelphis domestica ENSMODG00000003527 within_species_paralog 3 retrogenes
Monodelphis domestica ENSMODG00000009238 other_paralog 14 retrogenes
Mustela putorius furo ENSMPUG00000011606 ortholog_one2many 2 retrogenes
Mus musculus ENSMUSG00000015217 ortholog_one2many 1 retrogene
Oryctolagus cuniculus ENSOCUG00000005986 ortholog_one2many 7 retrogenes
Otolemur garnettii ENSOGAG00000001773 ortholog_one2many 19 retrogenes
Procavia capensis ENSPCAG00000001945 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000020818 ortholog_one2one 22 retrogenes
Pan troglodytes ENSPTRG00000022371 ortholog_one2one 22 retrogenes
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2one 1 retrogene
Rattus norvegicus ENSRNOG00000011096 ortholog_one2many 4 retrogenes
Rattus norvegicus ENSRNOG00000050910 ortholog_one2many 5 retrogenes
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2one 2 retrogenes
Sus scrofa ENSSSCG00000012745 ortholog_one2many 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000023908 ortholog_one2many 6 retrogenes
Tupaia belangeri ENSTBEG00000003068 ortholog_one2one 18 retrogenes
Tursiops truncatus ENSTTRG00000000205 ortholog_one2one 2 retrogenes
Vicugna pacos ENSVPAG00000000096 ortholog_one2one 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_587 89.39 94.68
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2. retro_mdom_698 64.67 85.11
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3. retro_mdom_831 95.53 95.21
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4. retro_mdom_1257 85.11 75.00
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5. retro_mdom_1508 91.95 78.19
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6. retro_mdom_1883 79.05 54.79
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7. retro_mdom_1952 76.47 72.34
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Download FASTA sequences of all ENSMODG00000005735 retrocopies