RetrogeneDB ID: | retro_mdom_831 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:133823480..133824017(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMODG00000005735 | ||
Aliases: | HMGB3, HmgB3x | ||
Description: | high mobility group protein B3 [Source:RefSeq peptide;Acc:NP_001157151] |
Percent Identity: | 95.53 % |
Parental protein coverage: | 95.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
M.KGDPKKPKGKMSAYAFFVQTCREEHKKKN.EVPVNFA.FSKKCSERWKTMSGKEKSKFDEMAKADKV. | |
Retrocopy | MPKGDPKKPKGKMSAYAFFVQTCREEHKKKNLEVPVNFA*FSKKCSERWKTMSGKEKSKFDEMAKADKV* |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQ |
YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFC.EFRPKIKSTNPGISIGDVAKKLGE.WNNLSDNEKQ | |
Retrocopy | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCAEFRPKIKSTNPGISIGDVAKKLGEIWNNLSDNEKQ |
Parental | PYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAAKAARKK |
PYNNKAAKLKEKYEKDVADYKSKGKFDGAKG.AKAA.KK | |
Retrocopy | PYNNKAAKLKEKYEKDVADYKSKGKFDGAKGVAKAAQKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |