RetrogeneDB ID: | retro_tbel_3476 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_142006:35968..36535(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 74.09 % |
Parental protein coverage: | 95.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGREKSKFDEMKA-DKVR |
MAKGDPKK.KGK...YAFFVQTCREEHKKKN.E.P.NFAEFSKKCS.R.KTM...EKSKFDEM....KV. | |
Retrocopy | MAKGDPKKLKGKIPVYAFFVQTCREEHKKKNLEIPGNFAEFSKKCSKR*KTMFRKEKSKFDEMTK<GKVS |
Parental | YDREMKDYGPAKGAKKKKDPN-PKRPPSGFFLFCSE-FRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSE |
YDREMKDYG..KG.KKKKDPN.PKR....FF.FCSE.F.P...S..P...S.GDVAKKLGEMWNNLSDSE | |
Retrocopy | YDREMKDYGLVKGGKKKKDPNVPKRTLCRFFPFCSE>FAPR--SNPPSLASLGDVAKKLGEMWNNLSDSE |
Parental | KQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEDEEEE |
KQPYITK..KLKEK.EKDVA..KSKGKFDGAKGPAKV..KK.EEE.E...E.E | |
Retrocopy | KQPYITKVTKLKEKSEKDVANSKSKGKFDGAKGPAKVGQKKLEEENEDE*EDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |