RetrogeneDB ID: | retro_tbel_1230 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4180:38890..39424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 83.52 % |
Parental protein coverage: | 89.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGREKSKFDEM-KADKVR |
MAKGDPKKPKG..SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSG.EKSK.DEM.KAD.VR | |
Retrocopy | MAKGDPKKPKGTVSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKSDEMAKAD*VR |
Parental | YDREMKDYGPAKGAKKKKDPN-PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEK |
Y..EMKDYGPA.G..K.K.PN.PK.RP..GFFLFCSEFRPK.KSTNPGIS.GDVA..LGE.WNNL.DSEK | |
Retrocopy | YGWEMKDYGPAQGS*KRKHPNAPK<RPLPGFFLFCSEFRPKVKSTNPGISVGDVAQELGETWNNLRDSEK |
Parental | QPYITKAAKLKEKY-EKDVADYKSKGKFDGA-KGPAKVARKK |
QP.ITKAAKLKEK..EKDVAD.KSKGKFDGA.KGPA.VARK. | |
Retrocopy | QPHITKAAKLKEKQ<EKDVADCKSKGKFDGA<KGPAQVARKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |