RetrogeneDB ID: | retro_tbel_1002 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3551:1467585..1467968(-) | ||
Located in intron of: | ENSTBEG00000014307 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 76.74 % |
Parental protein coverage: | 64.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KADKVRYDREMKDYGPAKGAKKKKDPN-PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNL |
K.DKV.YD.EMKDYGPAK..KKKKD.N.PKRPPSGFFLF.SEF.PKIKS.N.GISI.DVAK.LGEMWNNL | |
Retrocopy | KVDKVHYDQEMKDYGPAKEGKKKKDSNAPKRPPSGFFLFFSEFHPKIKSSNHGISIRDVAKTLGEMWNNL |
Parental | SDSEKQPYITKAAKLKEKYEKDVAD-YKSKGKFDGAKGPAKVARKKVEEEDEEDEEEEE |
SDS.KQ.YITK..KLKE..EKDV.D..KSKGKF.G.KG.AKVARKK.EE.DE.D..EEE | |
Retrocopy | SDSKKQSYITKPTKLKERDEKDVTD<LKSKGKFNGTKGLAKVARKKLEEDDEKDKKEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |