RetrogeneDB ID: | retro_tbel_2730 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117740:37540..38048(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTBEG00000003068 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 87.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMS-AYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGREKSKFDEMKADKVR |
MAKGDPKKPKGKMS.AY.FFVQTCREEHKKK..EVPVNFAEFSKKCSERWKT.S..EKSKFD.M...... | |
Retrocopy | MAKGDPKKPKGKMS>AYVFFVQTCREEHKKKDLEVPVNFAEFSKKCSERWKTVSEKEKSKFDKM----AK |
Parental | YDREMKDYGPAKGAKKKKDPN-PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
.D.EMKDYG.AKG.KKKKDP..PK.PPSGF.LFCSEFRPKIKSTNPGIS.GDVA.KLGEM.NNLSDSEKQ | |
Retrocopy | ADKEMKDYGLAKGGKKKKDPDVPKKPPSGFSLFCSEFRPKIKSTNPGISVGDVAQKLGEM*NNLSDSEKQ |
Parental | PYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
PYITKA.KL..KYEK.VAD..SKGKFDG.KG.AKVA | |
Retrocopy | PYITKAEKL--KYEKNVADCTSKGKFDGTKGRAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |