RetrogeneDB ID: | retro_sscr_1094 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | GL893689.1:167141..167612(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000012745 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.41 % |
Parental protein coverage: | 76.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNA---PKRPPSGFFLFCSEFRPK |
K...RWK..SGKEKS..DEMAK.DKV..D.EMK.YGP.KG.KKK..P.....P.RPPSGFFLFCS.F..K | |
Retrocopy | KSAKRWKIISGKEKSQSDEMAKPDKVHCDWEMKAYGPSKGDKKKNAPQKA*FPQRPPSGFFLFCSKFCHK |
Parental | IKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY-KSKGKFDGAKGPAKVARKK |
IK...PGI.I.DVAK.LG.MW.NLSDS.K...INKA.KLKEKYEKDV.D..K.KG.FDGAKGPAKVA.K. | |
Retrocopy | IKGIYPGIFI*DVAKQLGAMWCNLSDSNKHLCINKAEKLKEKYEKDVPDH>KPKGTFDGAKGPAKVAWKN |
Parental | VEEDDE-DEDDDDDDEEEE |
VEE.DE.D.......EE.E | |
Retrocopy | VEEEDE<DDEEEVEEEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 3 .72 RPM |
SRP014902_testis | 0 .00 RPM | 9 .19 RPM |
SRP018288_heart | 0 .00 RPM | 2 .93 RPM |
SRP018288_kidney | 0 .00 RPM | 13 .99 RPM |
SRP018288_liver | 0 .00 RPM | 1 .60 RPM |
SRP018288_lung | 0 .00 RPM | 3 .05 RPM |
SRP018856_adipose | 0 .00 RPM | 1 .01 RPM |
SRP035408_brain | 0 .00 RPM | 45 .42 RPM |
SRP035408_liver | 0 .06 RPM | 14 .12 RPM |