RetrogeneDB ID: | retro_vpac_245 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3256:57378..57858(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSVPAG00000000096 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 66.88 % |
Parental protein coverage: | 78.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
M.K.DPKKP.GKMS.YAFFVQTC.EEHKKK.P...V.F.EFSKKCSERWKTMS.KEK.KF..MAKADK.. | |
Retrocopy | MGKRDPKKPRGKMSSYAFFVQTCLEEHKKKHPNASVSFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAH |
Parental | YDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSE |
Y.REMK.Y.P.KG..KK..KDPNAPKRPP..FFLFCSE..PKIK....G.SIGDVAKKLGEMWNN..... | |
Retrocopy | YEREMKTYIPPKGETKKKFKDPNAPKRPPLAFFLFCSEYCPKIKGEYLGLSIGDVAKKLGEMWNNTAADD |
Parental | KQPYINKAAKLKEKYEKDVA |
K..Y....A....K...D.A | |
Retrocopy | KEKYEKDIAAYRAKGKPDAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |