RetrogeneDB ID: | retro_ecab_341 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 15:88054484..88054977(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSECAG00000018773 | ||
Aliases: | None | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 65.9 % |
Parental protein coverage: | 97.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | FQSAICGATAAKMQIFV-KT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLE-DGR |
F...IC.....KM.IFV.KT.L.GK.I.LEVE..DTI.NVKAKIQD.EG...DQQRLI...GK.LE.DG. | |
Retrocopy | FPIIICAGSITKMKIFV<KT<L*GKPIILEVETLDTIKNVKAKIQDEEGLSLDQQRLIL<TGKKLE<DGH |
Parental | TLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSD |
.L.D..IQ..S.L.......GG.KKR..KSYTTPKKNKHK.KK.KLA.LKYYKV.ENGKIS.L..EC.SD | |
Retrocopy | ALPDCSIQR-SPLFTLC*DCGGTKKRR-KSYTTPKKNKHKKKKFKLAGLKYYKVNENGKISLLCWECSSD |
Parental | ECGAGV-FMASHFDRHYCGKCCLTYCFNKPEDK |
.CGAG..FMASHFDR.Y..KCC.TYCFNKPEDK | |
Retrocopy | KCGAGI<FMASHFDRCYYDKCCFTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 230 .63 RPM |
SRP021940_cerebellum | 0 .00 RPM | 101 .84 RPM |
SRP021940_embryo | 0 .00 RPM | 161 .95 RPM |
SRP021940_placental_villous | 0 .00 RPM | 153 .91 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 144 .48 RPM |
SRP021940_testis | 0 .06 RPM | 70 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004017 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000023471 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000010052 | 5 retrocopies | |
Equus caballus | ENSECAG00000018773 | 3 retrocopies |
retro_ecab_341 , retro_ecab_748, retro_ecab_776,
|
Gorilla gorilla | ENSGGOG00000007678 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000023133 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017064 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000029449 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015563 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000001819 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003613 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000025871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011928 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004426 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009566 | 5 retrocopies |