RetrogeneDB ID: | retro_cfam_640 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:49611517..49611844(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSCAFG00000023471 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S27a (RPS27A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252228] |
Percent Identity: | 91.82 % |
Parental protein coverage: | 70.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISR |
GKQLEDG.TLSDYNIQKESTLHLVLRL..GAKKR.KKSYTTPKKNKHKRKKVKLAVLKYYKVD.NGKISR | |
Retrocopy | GKQLEDGHTLSDYNIQKESTLHLVLRLHDGAKKR-KKSYTTPKKNKHKRKKVKLAVLKYYKVDKNGKISR |
Parental | LRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK |
L.RECPSDECG.GVFMASHFD..YCGKCCLTYCFNKPEDK | |
Retrocopy | LHRECPSDECGVGVFMASHFDIQYCGKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 262 .66 RPM |
SRP017611_brain | 0 .00 RPM | 94 .95 RPM |
SRP017611_kidney | 0 .26 RPM | 1048 .93 RPM |
SRP017611_liver | 0 .00 RPM | 160 .04 RPM |