RetrogeneDB ID: | retro_pabe_117 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:87789824..87790289(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000006793 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025871 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYT |
VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL.GGAKKRKK.SYT | |
Retrocopy | VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLSGGAKKRKK-SYT |
Parental | TPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK |
TPKKNKHKRKKVKLAVLKYYKVDENGKIS.LRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK | |
Retrocopy | TPKKNKHKRKKVKLAVLKYYKVDENGKISHLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 2 .99 RPM | 0 .22 RPM |
SRP007412_cerebellum | 6 .44 RPM | 0 .24 RPM |
SRP007412_heart | 4 .94 RPM | 0 .03 RPM |
SRP007412_kidney | 7 .03 RPM | 0 .33 RPM |
SRP007412_liver | 7 .25 RPM | 0 .46 RPM |