RetrogeneDB ID: | retro_itri_962 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393351.1:2651546..2651961(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000009566 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.35 % |
Parental protein coverage: | 89.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLSDYNIQKESTLH |
MQIF.KTLTGKTI..L.VEPSDTIEN.KAKIQD.EGI.P..Q............R.T..DYNI.KESTLH | |
Retrocopy | MQIFIKTLTGKTIS<LKVEPSDTIENIKAKIQDNEGI-PPDQPRLIVAGKQLEDR<TYFDYNIEKESTLH |
Parental | LVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDR |
LVLRLRGGAKK.K..SYTTPKKNKHKRK..KLAVLKYYKVDENGKIS.LR.ECPSDECG.GVFMA.HFD. | |
Retrocopy | LVLRLRGGAKKKKLSSYTTPKKNKHKRKEGKLAVLKYYKVDENGKISHLRGECPSDECGDGVFMARHFDK |
Parental | HY |
HY | |
Retrocopy | HY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |