RetrogeneDB ID: | retro_ggor_2373 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:113770744..113771209(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSGGOG00000007678 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIF.KTL..KTITLE.EP.DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG.TLSDY.IQK.STLHLV | |
Retrocopy | MQIFMKTLMEKTITLEAEPLDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGCTLSDYSIQKDSTLHLV |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHY |
LRLRGG.KKR.KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIS.L.RE.PSDECGA.VFMASHFDRHY | |
Retrocopy | LRLRGGDKKR-KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISCLCRE*PSDECGAEVFMASHFDRHY |
Parental | CGKCCLTYCFNKPEDK |
CGKCCLTYCFNKPEDK | |
Retrocopy | CGKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 105 .69 RPM |
SRP007412_cerebellum | 0 .04 RPM | 133 .52 RPM |
SRP007412_heart | 0 .09 RPM | 62 .04 RPM |
SRP007412_kidney | 0 .16 RPM | 336 .07 RPM |
SRP007412_liver | 0 .18 RPM | 334 .68 RPM |
SRP007412_testis | 0 .00 RPM | 172 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3508 |