RetrogeneDB ID: | retro_mmul_222 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:77489050..77489521(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000013907 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.251 | ||
Ensembl ID: | ENSMMUG00000015563 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S27a [Source:RefSeq peptide;Acc:NP_001180515] |
Percent Identity: | 95.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTLTGKTITLEVEPS.TIENVKAKIQ.KEGIPP..QRLIFAGKQLEDGRTLSDYNIQKESTLHLV | |
Retrocopy | MQIFVKTLTGKTITLEVEPSNTIENVKAKIQEKEGIPPALQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHY |
LRLRGGAKKRKKKSYTTPKKNKHKRKKV.LAVLKYYKVDE.GKISRLRRECPSDECGAGVFMASHFDRHY | |
Retrocopy | LRLRGGAKKRKKKSYTTPKKNKHKRKKVMLAVLKYYKVDEKGKISRLRRECPSDECGAGVFMASHFDRHY |
Parental | CGKCCLTYCFNKPEDK |
C.KCCLTYCFNKPEDK | |
Retrocopy | CDKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 58 .49 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 119 .31 RPM |
SRP007412_cerebellum | 0 .06 RPM | 65 .74 RPM |
SRP007412_heart | 0 .00 RPM | 89 .09 RPM |
SRP007412_kidney | 0 .12 RPM | 84 .15 RPM |
SRP007412_liver | 0 .12 RPM | 98 .84 RPM |
SRP007412_testis | 0 .04 RPM | 45 .01 RPM |