RetrogeneDB ID: | retro_ocun_1087 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:28509536..28509800(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000003613 | ||
Aliases: | None | ||
Description: | Ubiquitin [Source:UniProtKB/Swiss-Prot;Acc:P62975] |
Percent Identity: | 63.04 % |
Parental protein coverage: | 57.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL-VLRLRG |
L...T.TLEVEP....IE.V.AK.Q..EG.PP.QQRLI.A.KQLEDG...SD..I.KESTL.L.VLR..G | |
Retrocopy | LLESTVTLEVEP<LAMIEDVQAKTQGEEGLPPGQQRLILADKQLEDG*ASSDCSIEKESTLIL<VLRGHG |
Parental | GAKKRKK-KSYTTPKKNKHKRK |
GAKKR.K..S.TTP.K.KH.RK | |
Retrocopy | GAKKREK<RSCTTPTKSKHRRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 235 .25 RPM |
SRP017611_liver | 0 .00 RPM | 62 .66 RPM |