RetrogeneDB ID: | retro_cfam_1048 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 22:20833248..20833702(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSCAFG00000023471 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S27a (RPS27A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252228] |
Percent Identity: | 67.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MQIFVK-TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL-H |
MQIF.K..L.GKTI.L.VEP..TIENVK.KIQDKEGI..D.Q.LIFA.....D.....D.NI..ESTL.. | |
Retrocopy | MQIFMK>NLMGKTIILKVEPPNTIENVKTKIQDKEGISLD*QTLIFASNWKMD---VFDCNIP*ESTL>F |
Parental | LVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKY-YKVDENGKISRLRRECPSDECGAGVFMASHFD |
LVLRL.GGAKKRK.KSY..PKKN..K.KKVKLAVLKY..KVD.N.KIS.L..E.PS.ECGA..FMA..FD | |
Retrocopy | LVLRLPGGAKKRKNKSYSNPKKNEAK-KKVKLAVLKY<LKVDKNDKISCLCGESPSNECGARDFMAHGFD |
Parental | RHYCGKCCLTYCFNKPEDK |
RHYCG..CLTYC.NK.EDK | |
Retrocopy | RHYCGE-CLTYCLNKLEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 262 .66 RPM |
SRP017611_brain | 0 .00 RPM | 94 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 1048 .93 RPM |
SRP017611_liver | 0 .00 RPM | 160 .04 RPM |