RetrogeneDB ID: | retro_ocun_288 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:54751582..54751923(+) | ||
Located in intron of: | ENSOCUG00000014125 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000003613 | ||
Aliases: | None | ||
Description: | Ubiquitin [Source:UniProtKB/Swiss-Prot;Acc:P62975] |
Percent Identity: | 69.83 % |
Parental protein coverage: | 73.72 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLSDYNIQKESTLHLVL |
IFV.T..GKTIT.EV..SDT.E.VKAKI.DKEGIPPD.QR.I.A..KQLE...T.SDYNI.KES..HLVL | |
Retrocopy | IFVITFLGKTITMEVASSDTTETVKAKITDKEGIPPD*QRPIVAA<KQLEYRWTSSDYNI*KESAHHLVL |
Parental | RLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL |
RL.GGA.KR.KKS.T.PKKN...R.KVKL.VLK.YKVDENG.I..L | |
Retrocopy | RLCGGARKRRKKS*TIPKKNR*ER-KVKLVVLK*YKVDENGLINHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 235 .25 RPM |
SRP017611_liver | 0 .00 RPM | 62 .66 RPM |