RetrogeneDB ID: | retro_lafr_185 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_1:49585200..49585618(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSLAFG00000023133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QVEPSDTIENVKAKIQDKEGKRWIPPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRK |
...PS.TIENVKAKIQ....K..IPP..Q.RLIF.G..LEDG..LS.YNIQKE.TLHLVLRL.G.AKK.K | |
Retrocopy | EIQPSGTIENVKAKIQ---AKGRIPPI<QHRLIFPGR*LEDGHNLSNYNIQKEFTLHLVLRLCGDAKK-K |
Parental | KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLT-YCF |
K..Y.TPKKN.HKRKKVKLAVLKYY.VD.NGKIS.L...C.SDECG.GV.MA.H..RHYCGKCCLT.YCF | |
Retrocopy | K*FYITPKKNEHKRKKVKLAVLKYYRVDKNGKISCLHC*CLSDECGTGVLMANHVGRHYCGKCCLT<YCF |
Parental | NKPEDK |
.KPEDK | |
Retrocopy | GKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |